Is This The Best Way Round?

lilacamy931

Starting again
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Hello All I have pygmy cories and they are in this tank:
4142941977_44f9f4004b.jpg

I have just jigged things around and want to put them in here:
4142943235_474cabd74e.jpg

There is this filter:
4143699454_a8b766a0c7.jpg

And the question is, at the moment I have four lamps in the second tank keeping filter alive. I want to move the lamps to my commuinity, so I can empty the tank get it into position and either next weekend or the weekend after rescape so it has sand, reinstall plants and then put my 6 adult cories in along with the fry I have in netting and release them in to the main body of the tank once grown more. For now can I put the filter above onto the little tank to keep the bacteria alive? Or is this wrong to do?
p.s. (the filter has been scrubbed since this pic!)
 

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