Do the spots appear to stick out sideways at all, like a bump, or are they smooth and not stick out at all?
Have the spots grown or become bigger over the last 3 months?
The black spot could almost be colouration altho honey dwarf gouramis don't have black spots. But it could be a genetic mutation. However, the red spot is a concern. But if it hasn't grown or changed shape or size since it first appeared, then it is less of an issue.
It could be a parasitic worm that is living there but it doesn't look like that.
If it was a bacterial infection it would get worse quickly and start eroding away the fin and fin rays.
It could be a blood clot but as long as it doesn't get worse it shouldn't be a problem.
It could be a red freckle/ mole, which would be rare but unlikely to cause any issues.
At this stage monitor and if the spots get bigger then post new pics.