Just so you know, cbs: the biowheel was invented to be modeled after similar structures found in wastewater treatment plants. The whole point of the biowheel is to expose the ammonia oxidizing bacteria and nitrite oxidizing bacteria (the cycling bacteria) to the air, where the concentration of oxygen is somewhere around 10,000 times higher than the concentration of oxygen in water. As you can probably infer, those bacteria need oxygen to do their cycling work.
If your biowheel ever stops spinning again -- for whatever reason (clogged filter again, broken pump in the unit, power loss, etc.) the first thing you want to do is float the biowheel in the tank. 1) The bacteria will die if dried out, so you want to keep them wet. 2) The bacteria on the wheel will continue to process the ammonia and nitrite. So, the tank won't be anywhere as in bad of shape as they would have otherwise. A few years back a bad ice storm took out power for over three days. By floating the biowheel in the tanks, I had zero losses and zero ammonia and nitrite only 2 hours after the power came back on.
The advice about not replacing the media is for those filter that don't have biowheels. Something like a sponge filter, or canister filter. Your biowheel filter will have the cycling bacteria primarily colonized on the biowheel itself. That is the whole point of the biowheel.