I have 5 danios at the moment in the tank and that's probably small for a 130 litre. I try to feed them once or twice a day to help the bacteria feed on the waste. No use of artificial ammonia as I had the thought of seeding the bacteria in. One of my sponges I put in my small 28 litre filter I placed in the new tank when I setted it up to jump start the process. Only plants I have is a pot of valisneria and the leaves of that are just detaching. Also have java moss which I don't know if they take in Nitrates. If the parameters stay low I might see in getting some cardinal tetras in a weeks time.
Is there a certain part of the tank which I should get the samples of water from?
Five danios in 130 liters (30-some gallons) is miniscule, so previous comments remain. The plants/seeded bacteria was adequate.
Plants do not take up nitrates primarily, they prefer ammonium (ammonia) and their rapid assimilation of ammonia/ammonium means less for the bacteria so less nitrite, and thus less nitrate. Nitrate is taken up by most plants only when ammonium is insufficient in balance, as the plants have to spend valuable energy changing the nitrate back into ammonium, and they don't do this unless absolutely necessary to get nitrogen in balance. One scientific test is worth noting: The turnover time for ammonium at 0.4 ppm N in Pistia stratiotes was found to be 4 hours, while the same plant species required 20 hours for nitrate turnover. I suspect this may be due to the extra internal work the plant must go through to deal with nitrates as opposed to ammonium.
I take water for tests from just below the surface. I have never heard that it matters.