The effects of inbreeding vary a lot from species to species. As you have bred thousands of guppies from just 11, they certainly will be inbred, however that doesn't necessarily mean that they will show any negative effects. I suspect that a process called purging is going on here. Basically, individuals who have inherited 'bad genes' from their parents will die before or shortly after birth or be less successful breeders. This removes the 'bad genes' from the population. As Corleone pointed out, guppies are already pretty inbred so I suspect this has been happening for a long time. Alternatively, you could just have been lucky and picked some genetically healthy guppies originally!
Interestingly, selectively breeding guppies to be 'prettier' is likely to increase the effects of inbreeding because it is not the 'fittest' individuals which are allowed to breed, but the prettiest. These individuals may have 'bad genes' but still be bred from (this goes on a lot in dogs).