Inbreeding is rarely an issue with Fundulopanchax. But age is.
Some of the weird Fp we don't see often, like marmoratus/ndianus etc can be hard to breed. Even the absolutely easy to breed scheeli I recently got aren't cooperating at the moment. They look ready, but they aren't.
I just went digging in the French (KCF) site, and noticed something interesting. They have a lot of people breeding the fish (well, 7 or 8, and for a killie globally, that's a lot). The eggs are said to be fragile for the first 24 hours. As well, there may be light sensitivity. They say the fish should be in dim lighting, and that the eggs should also. They seem to direct breeders to natural set ups, saying that fry predation is minimal. You might want to try that with one of your pairs - maybe a 10 gallon, unheated, with gravel and lots of plants.
The guy who wrote the article noted eggs were laid in the morning at the top of mops in his place, which suggests no eggs in gravel. But you never know for sure.
The most frustrating element in that article is the unnamed author said they were easy and prolific....