That's great - thank you, I really appreciate your help!
I knew a little bit about the inbreeding factor when I bought my guppies - that's why I bought the females from a store in one town and the males from a store in another. However, as livebearers are almost always pregnant, they were when I brought them home, so I don't know who the fathers of the first batch of fry are/were...that could be where the problem was. However, my females are now pregnant by one of the two males I have in the tank now, from the different store, so hopefully the fry they have this time around will be better. They're due any day.
As for the colours, I have one female who's black from halfway down her body to her tail, one that's all yellow, one that's got a black and yellow tail, and one with an orange and black tail and a blue dorsal fin. The black and the yellow mothers are the two I got these fry from, but if what you say about those colours being the sorta less inbred ones, the two deformities I do have must just be from the mothers and whoever else they were tanked with ("fish relatives", I would assume) inbreeding.
The (4) girls, spread over two pictures, and one of my two males: