Oh god that really does sound like a killer job. I would like to be dealing with blue green algae Instead too I turn my light on at around 12 am and turn it off a around 12 pm also. I have 2 mollies, 4 guppies, about 10-11 shrimp, 4 neon tetras, a small young pleco, and a bunch of guppy fry. The only plant that I had in the tank that was effected was a cryptocortne undulate, I also have 2 moss balls which donāt seem to be affected, or at least I canāt really tell on them. I donāt use any fertiliser in my tank. Iām pretty sure I have a higher bio load than I should because my mother loved feeding my fish VERY regularly, sheās stopped now thankfully so thatās under control to one feeding a day and Iām also trying to limit my lighting.
Considering that the algae will always come back eventually, is it dangerous or harmful for my fish to just keep it in there and deal with it like I have?
Right off I see a few things likely to be causing this, but we still need the whole picture. It is not that difficult to work out the balance of light and nutrients that will work. Light is one issue that stands out...12 hours is too much for most tanks, and given the single plant and moss balls, this is definitely going to cause algae. I will need to know more data (below) before I can recommend a better duration, but reducing this to 7 or 8 hours max is going to be necessary. Getting some more plants, especially floating will also make a big difference.
It is not necessarily harmful to fish, but here we come to the underlying causes again. If there are high nutrients, from for example too many fish and/or too large fish for the tank volume; insufficient water changes, filter cleanings, and/or substrate cleanings; too many plant additives; and/or over feeding the fish--any one or more of these will create more organics and this can cause problems for fish. We need to know the test results for especially nitrates and pH, as these two can be indicative of problems. Ammonia and nitrite are also worth testing, though less likely to be a factor here, but it is as well to know for certain.
Can you provide data on the light...the type, wattage, spectrum, etc. And the tank size...without knowing that we cannot say if these fish are too many or not. How frequent are water changes, and what volume of the tank water is changed?