I rinse with warm water, and have a bottle brush hanging from the same rack as the bottles. About once every month, I use a mild bleach solution on the 2 bottles I use.
I mix up fresh water daily, by dropping a heaping teaspoon of salt into aerated water. I have seen foaming, and consider it to happen when I wait too long to harvest, and the nauplii are dying.
You learn to sniff the bbs as well. You'll learn the subtle differences in when it's ready and when it's overdue. We tend to put more eggs in the water than it should probably have, so things can go south quickly.