If you run the filter & media in an empty tank, you will not be feeding the bacteria, which will start to die off. I could see letting the water sit overnight with an empty filter if you had more delicate fish such as discus, but oscars & dempseys are pretty hardy. I would let it run until any debris from new gravel or sand, if you added any, settled down. This shouldn't take more than a couple of hours if you have decent gravel. As long as the tanks are the same temp, with water from the same source, you should be able to switch them right over.
Tolak