You might be okay since alot of the bacteria is supposed to be present in the decor and gravel also. Do you have a test kit to keep an eye on water parameters in case something starts to go down hill? With my built in filters they have replaceable filter pads so when I replace them I am essentially removing the existing filter and haven't had any issues so far. If you are really worried you could try some cycle or biospira. Not everyone believes they can work, but I started one tank with cycle and it seemed to help, another for some strange reason showed a slight spike on nitrite only (less than .25, but not quite 0) after several water changes due to illness issues and water cloudiness so I added cycle and haven't seen any readings register in 2 days.