I'm going to suggest a slightly different approach. First, a bacterial bloom is common whenever canister filters are cleaned, or replaced. We are not talking nitrifying bacteria here, but other species that live in the filter. Water changes can also cause mild and temporary cloudiness, for the same reason; I see this every water change. What you are seeing is not a loss of bacteria, but a rapid increase. The tap water is full of organics, and this causes the microscopic bacteria to suddenly multiply because of the increased food available, and this creates the cloudiness. The filter replacement also unbalanced things.
As for the nitrifying bacteria, these on their own do not affect water clarity, at least not to my knowledge. But I second Akasha's suggestion to test ammonia and nitrite for a few days. And observe fish behaviours.
I just re-set my 70g last week, with new sand, all new filter media, but using wood and plants from the previous tank or other tanks. The fish all went in on Monday. I am dealing with mild cloudiness, as I would expect from new tanks/new filter media, but ammonia and nitrite are zero, nitrate at 5 ppm, and remaining so. I did another partial water change this morning. Now, my live plants obviously help, but there are also the nitrifiers living on the plants and wood, and they multiply very rapidly. Chlorinated water does not kill nitrifiers completely, depending upon the level of chlorine and the exposure time. For 20 years I have cleaned my filters under the tap, and I have never had issues connected to the nitrification. And there are more nitrifying bacteria in the substrate than in the filter to begin with. Things have to be kept in perspective.
Byron.