I am not the expert here, but wanted to jump in on the subject because I think you can still control the amount of food that you are feeding, no matter what it is, to avoid adding to the ammonia and what not.
I feed all sorts of frozen foods to my fish, including krill, silversides, brine shrimp, mysis shrimp and blood worms. Rather than just plop a frozen cube in my tank, I thaw them out in a cup dedicated to just the fish (usually it is one of those containers that potato salad comes in from the grocery store). When it is thawed out, I can 'dose' out food much better and even feed it slowly enough to make sure than only a little or none of it hits the substrate. You may also think about feeding only once a day or once every other day. Clownfish especially will learn the 'pattern' and know when to get ready to eat.
I use this method with my cichlid tank because they usually eat about two and a half cubes of frozen food every other day. I just put the container with the other half of the brine shrimp or whatever into the freezer until the next feeding when I just add two cubes instead of three. I had a big problem at one time with my cichlids not eating fast enough to catch it all before it hit the ground and was lost. So, I just use a plastic spoon to feed it more slowly. It is kind of cool to watch the feeding frenzy.
As far as breeding the brine shrimp, it would most likely be easy enough for you to do. My lfs sells live brine shrimp, but it does get expensive and they usually cannot handle all of the water flow in my tank, so they die as they crash into the LR and glass. If you still want to go witth that idea though, I would get myself a cheap heater and a 10 gallon tank to raise them in. Those little black hatcheries can only sustain them for a short time, too short for them to get big enough to even matter to a fish. They will do much better if you keep the temp really high (around 90 degrees F, I believe) and you can use the waste water from your water changes to fill the tank. This way they will be acclimated immidietly to your tank's salinity.